MotionCorrectionLowSNR (4).pdf (665.21 kB)
Motion correction in low SNR MRI using an approximate rician log-likelihood
chapter
posted on 2023-06-10, 04:19 authored by Ivor SimpsonIvor Simpson, Balazs Orzsik, Neil Harrison, Iris AsllaniIris Asllani, Mara CercignaniCertain MRI acquisitions, such as Sodium imaging, produce data with very low signal-to-noise ratio (SNR). One approach to improve SNR is to acquire several images, each of which takes may take more than a minute, and then average these measurements. A consequence of such a lengthy acquisition procedure is subject motion between each image. This work investigates a solution for retrospective motion correction in this scenario, where the high level of Rician noise renders standard registration tools less effective. We employ a simple generative model for the data based on tissue segmentation maps, and provide a differentiable approximation of the Rician log-likelihood to fit the model to the observations. We find that this approach substantially outperforms a Gaussian log-likelihood baseline on synthetic data that has been corrupted by Rician noise of varying degrees. We also provide results of our approach on real Sodium MRI data, and demonstrate that we can reduce the effects of substantial motion compared to a general purpose registration tool.
History
Publication status
- Published
File Version
- Accepted version
Journal
In: Hering, A., Schnabel, J., Zhang, M., Ferrante, E., Heinrich, M., Rueckert, D. (eds) Biomedical Image RegistrationISSN
0302-9743Publisher
Springer ChamExternal DOI
Volume
13386Page range
147-155Pages
222.0Event name
International Workshop on Biomedical Image RegistrationEvent type
conferenceBook title
Biomedical Image RegistrationISBN
9783031112027Series
Lecture Notes in Computer ScienceDepartment affiliated with
- Informatics Publications
Notes
10th International Workshop, WBIR 2022, Munich, Germany, July 10–12, 2022, ProceedingsFull text available
- No
Peer reviewed?
- Yes