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[Protocol] Hi-C2B: optimized detection of chromosomal contacts within synchronized meiotic S. cerevisiae cells

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journal contribution
posted on 2024-09-02, 10:16 authored by Ellie May Wright, Stephanie Schalbetter, Matt NealeMatt Neale
Hi-C, a genome-wide chromosome conformation capture assay, is a powerful tool used to study three-dimensional genome organization by converting physical pairwise interactions into counts of pairwise interactions. To study the many temporally regulated facets of meiotic recombination in S. cerevisiae, the Hi-C assay must be robust such that fine- and wide-scale comparisons between genetic datasets can be made. Here we describe an updated protocol for Hi-C (Hi-C2B) that generates reproducible libraries of interaction data with low noise and for a relatively low cost.<p></p>

Funding

Spatiotemporal control of meiotic recombination : WELLCOME TRUST | 225852/Z/22/Z

Spatial regulation of meiotic recombination : WELLCOME TRUST | 200843/Z/16/Z

History

Publication status

  • Published

File Version

  • Accepted version

Journal

Methods in Molecular Biology

ISSN

1064-3745

Publisher

Springer

Volume

2818

Page range

45-63

Book title

Methods in Molecular Biology

Place of publication

New York, USA

ISBN

9781071639054

Department affiliated with

  • Sussex Centre for Genome Damage Stability Publications

Institution

University of Sussex

Full text available

  • Yes

Peer reviewed?

  • Yes

Editors

Carballo, J.A.